Class/Object

au.csiro.variantspark.cli

ImportanceCmd

Related Docs: object ImportanceCmd | package cli

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class ImportanceCmd extends ArgsApp with SparkApp with Echoable with Logging with TestArgs

Linear Supertypes
TestArgs, Echoable, SparkApp, Logging, ArgsApp, CmdApp, AnyRef, Any
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  2. By Inheritance
Inherited
  1. ImportanceCmd
  2. TestArgs
  3. Echoable
  4. SparkApp
  5. Logging
  6. ArgsApp
  7. CmdApp
  8. AnyRef
  9. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new ImportanceCmd()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. val beSilent: Boolean

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    Definition Classes
    Echoable

  6. val beVerbose: Boolean

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    Definition Classes
    Echoable

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. lazy val conf: SparkConf

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    Definition Classes
    SparkApp

  9. def createConf: SparkConf

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    Definition Classes
    SparkApp

  10. def defaultMasterUrl: String

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    Definition Classes
    SparkApp

  11. def echo(msg: ⇒ String): Unit

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    Definition Classes
    Echoable

  12. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  14. val featureColumn: String

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  15. val featuresFile: String

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  16. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  17. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  18. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  19. val includeData: Boolean

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  20. val inputFile: String

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  21. val inputType: String

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  22. val inputVcfBiallelic: Boolean

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  23. val inputVcfSeparator: String

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  24. def isEcho: Boolean

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    Definition Classes
    Echoable

  25. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  26. def isSilent: Boolean

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    Definition Classes
    Echoable

  27. def isTraceEnabled(): Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  28. def isVerbose: Boolean

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    Definition Classes
    Echoable

  29. def loadCSV(): CsvFeatureSource

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  30. def loadParquet(): ParquetFeatureSource

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  31. def loadVCF(): VCFFeatureSource

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  32. def log: Logger

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    Attributes
    protected
    Definition Classes
    Logging

  33. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  34. def logDebug(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  35. def logError(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  36. def logError(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  37. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  38. def logInfo(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  39. def logName: String

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    Attributes
    protected
    Definition Classes
    Logging

  40. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  41. def logTrace(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  42. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  43. def logWarning(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  44. val modelFile: String

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  45. val nTrees: Int

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  46. val nVariables: Int

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  47. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  48. final def notify(): Unit

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    Definition Classes
    AnyRef

  49. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  50. val outputFile: String

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  51. val randomSeed: Long

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  52. val rfBatchSize: Int

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  53. val rfEstimateOob: Boolean

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  54. val rfMTry: Long

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  55. val rfMTryFraction: Double

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  56. val rfRandomizeEqual: Boolean

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  57. val rfSampleNoReplacement: Boolean

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  58. val rfSubsampleFraction: Double

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  59. def run(): Unit

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    Definition Classes
    ImportanceCmd → ArgsApp
    Annotations
    @Override()

  60. def run(args: Array[String]): Unit

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    Attributes
    protected[au.csiro.sparkle.common.args4j]
    Definition Classes
    ArgsApp → CmdApp

  61. def runApp(args: Array[String]): Unit

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    Attributes
    protected[au.csiro.sparkle.cmd]
    Definition Classes
    CmdApp

  62. implicit lazy val spark: SparkSession

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    Definition Classes
    SparkApp

  63. val sparkPar: Int

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  64. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  65. def testArgs: Array[String]

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    Definition Classes
    ImportanceCmd → TestArgs
    Annotations
    @Override()

  66. def toString(): String

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    Definition Classes
    AnyRef → Any

  67. def usage(): Unit

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    Attributes
    protected[au.csiro.sparkle.common.args4j]
    Definition Classes
    ArgsApp → CmdApp

  68. val varOrdinalLevels: Int

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  69. def verbose(msg: ⇒ String): Unit

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    Definition Classes
    Echoable

  70. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  71. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  72. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  73. def warn(msg: ⇒ String): Unit

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    Definition Classes
    Echoable

Deprecated Value Members

  1. implicit lazy val sc: SparkContext

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    Definition Classes
    SparkApp
    Annotations
    @deprecated
    Deprecated

  2. lazy val sqlContext: SQLContext

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    Definition Classes
    SparkApp
    Annotations
    @deprecated
    Deprecated

Inherited from TestArgs

Inherited from Echoable

Inherited from SparkApp

Inherited from Logging

Inherited from ArgsApp

Inherited from CmdApp

Inherited from AnyRef

Inherited from Any

Ungrouped