Class

au.csiro.variantspark.genomics.impl

SimpleMeiosisSpecFactory

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case class SimpleMeiosisSpecFactory(contigSet: ContigSet, seed: Long = defRng.nextLong) extends MeiosisSpecFactory with Product with Serializable

Very basic factory that just generates once random crossing over in each contig

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Serializable, Serializable, Product, Equals, MeiosisSpecFactory, AnyRef, Any
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  1. SimpleMeiosisSpecFactory
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. MeiosisSpecFactory
  7. AnyRef
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Instance Constructors

  1. new SimpleMeiosisSpecFactory(contigSet: ContigSet, seed: Long = defRng.nextLong)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. val contigSet: ContigSet

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  7. def createMeiosisSpec(): Map[ContigID, MeiosisSpec]

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    Definition Classes
    SimpleMeiosisSpecFactory → MeiosisSpecFactory

  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
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    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

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    Definition Classes
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  12. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  13. final def notify(): Unit

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    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  15. val rng: XorShift1024StarRandomGenerator

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  16. val seed: Long

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  17. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  18. final def wait(): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  20. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from MeiosisSpecFactory

Inherited from AnyRef

Inherited from Any

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