jeanluc

Type Members

1. class FilterBam extends JeanLucTask

   

   Task for filtering a BAM to a specific set of intervals while removing unmapped and duplicate reads.

2. class GenerateRegionsFromFasta extends JeanLucTask

   

   Tool to generate FreeBayes/bamtools region lists from a FASTA, for use when parallelizing FreeBayes.

3. abstract class JeanLucTask extends PicardTask

   

   Base Task for any task in the JeanLuc jar.