Class

dagr.tasks.picard

CopyBaiToBamBai

Related Doc: package picard

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class CopyBaiToBamBai extends ShellCommand

Linear Supertypes
ShellCommand, FixedResources, ScheduleWithEmptyDefaultResources, ProcessTask, UnitTask, Schedulable, LazyLogging, Task, Dependable, AnyRef, Any
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Inherited
  1. CopyBaiToBamBai
  2. ShellCommand
  3. FixedResources
  4. ScheduleWithEmptyDefaultResources
  5. ProcessTask
  6. UnitTask
  7. Schedulable
  8. LazyLogging
  9. Task
  10. Dependable
  11. AnyRef
  12. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new CopyBaiToBamBai(bam: PathToBam)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. def !=>(other: MultiTask): other.type

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    Definition Classes
    Task → Dependable

  3. def !=>(other: Task): other.type

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    Definition Classes
    Task → Dependable

  4. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  5. def +(other: String): String

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to any2stringadd[CopyBaiToBamBai] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd

  6. def ->[B](y: B): (CopyBaiToBamBai, B)

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to ArrowAssoc[CopyBaiToBamBai] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()

  7. def ::(other: Task): MultiTask

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    Definition Classes
    Task

  8. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  9. def ==>(other: MultiTask): other.type

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    Definition Classes
    Task → Dependable

  10. def ==>(other: Task): other.type

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    Definition Classes
    Task → Dependable

  11. def applyResources(resources: ResourceSet): Unit

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    Definition Classes
    UnitTask → Schedulable

  12. def args: Seq[Any]

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    Definition Classes
    ShellCommand → ProcessTask

  13. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  14. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  15. val commands: String*

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    Definition Classes
    ShellCommand

  16. def ensuring(cond: (CopyBaiToBamBai) ⇒ Boolean, msg: ⇒ Any): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  17. def ensuring(cond: (CopyBaiToBamBai) ⇒ Boolean): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  18. def ensuring(cond: Boolean, msg: ⇒ Any): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  19. def ensuring(cond: Boolean): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  20. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  21. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  22. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  23. def formatted(fmtstr: String): String

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to StringFormat[CopyBaiToBamBai] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()

  24. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  25. final def getTasks: Traversable[_ <: CopyBaiToBamBai.this.type]

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    Definition Classes
    UnitTask → Task

  26. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  27. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  28. lazy val logger: Logger

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    Attributes
    protected
    Definition Classes
    LazyLogging

  29. var name: String

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    Definition Classes
    Task

  30. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  31. final def notify(): Unit

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    Definition Classes
    AnyRef

  32. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  33. def onComplete(exitCode: Int): Boolean

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    Definition Classes
    Task

  34. def pickResources(availableResources: ResourceSet): Option[ResourceSet]

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    Definition Classes
    FixedResources → Schedulable

  35. def removeDependency(task: Task): Boolean

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    Definition Classes
    Task

  36. def requires(cores: Double, memory: String): CopyBaiToBamBai.this.type

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    Definition Classes
    FixedResources

  37. def requires(cores: Cores, memory: Memory): CopyBaiToBamBai.this.type

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    Definition Classes
    FixedResources

  38. def requires(resources: ResourceSet): CopyBaiToBamBai.this.type

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    Definition Classes
    FixedResources

  39. def resources: ResourceSet

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    Definition Classes
    ScheduleWithEmptyDefaultResources

  40. def retry(taskInfo: TaskExecutionInfo, failedOnComplete: Boolean): Option[Task]

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    Definition Classes
    Task

  41. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  42. def toString(): String

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    Definition Classes
    ProcessTask → AnyRef → Any

  43. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  44. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  45. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  46. def withName(name: String): CopyBaiToBamBai.this.type

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    Definition Classes
    Task

  47. def →[B](y: B): (CopyBaiToBamBai, B)

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to ArrowAssoc[CopyBaiToBamBai] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from ShellCommand

Inherited from FixedResources

Inherited from ScheduleWithEmptyDefaultResources

Inherited from ProcessTask

Inherited from UnitTask

Inherited from Schedulable

Inherited from LazyLogging

Inherited from Task

Inherited from Dependable

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from CopyBaiToBamBai to any2stringadd[CopyBaiToBamBai]

Inherited by implicit conversion StringFormat from CopyBaiToBamBai to StringFormat[CopyBaiToBamBai]

Inherited by implicit conversion Ensuring from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai]

Inherited by implicit conversion ArrowAssoc from CopyBaiToBamBai to ArrowAssoc[CopyBaiToBamBai]

Ungrouped