Sam
DataTypes
SamOrBam
DataTypes
SamToFastq
picard
SamtoolsPileup
samtools
SamtoolsTask
samtools
ScriptName
BwaK8AltProcessor
SortSam
picard
SplitNCigarReads
gatk
Strelka
vc
StrelkaDir
Strelka
SummaryMetricsExtension
CollectGcBiasMetrics
sampleNames
GetSampleNamesFromVcf
samtools
tasks
secondIn
IntervalListTools
somatic
FilterFreeBayesCalls
FreeBayes
somaticPValue
Varscan2Somatic
sort
IntervalListTools
sortOrder
SortSam
strandFilter
Varscan2Somatic