CalculateDownsamplingProportion
misc
CallMolecularConsensusReads
fgbio
Chained
DownsamplingStrategy
CleanSam
picard
CollectAlignmentSummaryMetrics
picard
CollectGcBiasMetrics
picard
CollectHsMetrics
picard
CollectInsertSizeMetrics
picard
CollectMultipleMetrics
picard
CollectSequencingArtifactMetrics
picard
CollectTargetedPcrMetrics
picard
CollectVariantCallingMetrics
picard
CollectWgsMetrics
picard
ConstantMemory
DownsamplingStrategy
CopyBaiToBamBai
picard
callSample
GenotypeConcordance
callStatsOutput
Mutect1
callVcf
GenotypeConcordance
clippingAttribute
ExtractUmisFromBam
command
SamtoolsTask
commandName
FgBioTask
PicardTask
compress
FilterFreeBayesCalls
FreeBayes
compressionLevel
FgBioTask
PicardTask
configFile
Strelka
contaminationFraction
HaplotypeCaller
contextSize
CollectSequencingArtifactMetrics
createIndex
PicardTask
createMd5File
PicardTask