Identity
AssignmentStrategy
IndelRealigner
gatk
IndelRealignment
gatk
IndexVcfGz
misc
IntervalListToBed
picard
IntervalListTools
picard
in
BwaAln
CallMolecularConsensusReads
ExtractUmisFromBam
GroupReadsByUmi
TrimPrimers
IndelRealigner
RealignerTargetCreator
SplitNCigarReads
FilterBam
CleanSam
CollectAlignmentSummaryMetrics
CollectGcBiasMetrics
CollectHsMetrics
CollectInsertSizeMetrics
CollectMultipleMetrics
CollectSequencingArtifactMetrics
CollectTargetedPcrMetrics
CollectWgsMetrics
EstimateLibraryComplexity
FilterVcf
FixMateInformation
GatherBamFiles
IntervalListTools
MarkDuplicates
MarkIlluminaAdapters
MergeVcfs
PicardMetricsTask
RevertSam
SetNmAndUqTags
SortSam
SortVcf
UpdateVcfSequenceDictionary
ValidateSamFile
FilterFreeBayesCalls
inJvmMethod
MakeDirectory
inOutMap
IndelRealigner
includeUnpaired
CollectSequencingArtifactMetrics
input
TrimFastq
inputs
MarkDuplicates
intersectIntervals
GenotypeConcordance
intervals
GatkTask
FilterBam
CollectSequencingArtifactMetrics
GenotypeConcordance
invert
IntervalListTools