Object

dagr.tasks

DagrDef

Related Doc: package tasks

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object DagrDef

Object that is designed to be imported with import DagrDef._ in any/all classes much like the way that scala.PreDef is imported in all files automatically.

New methods, types and objects should not be added to this class lightly as they will pollute the namespace of any classes which import it.

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Type Members

  1. type DirPath = Path

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    Represents a path to directory.

  2. type FilePath = Path

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    Represents a path to a file (not a directory) that doesn't have a more specific type.

  3. type FilenamePrefix = String

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    A String that represents the prefix or basename of a filename.

  4. type PathPrefix = Path

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    Represents a full path including directories, that is intended to be used as a prefix for generating file paths.

  5. type PathToBam = Path

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    Represents a path to a BAM (or SAM or CRAM) file.

  6. type PathToFasta = Path

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    Represents a path to a Reference FASTA file.

  7. type PathToFastq = Path

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    Represents a path to a FASTQ file (optionally gzipped).

  8. type PathToIntervals = Path

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    Represents a path to an intervals file (IntervalList or BED).

  9. type PathToVcf = Path

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    Represents a path to a VCF/BCF/VCF.gz.

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  7. def equals(arg0: Any): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. def hashCode(): Int

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  11. final def isInstanceOf[T0]: Boolean

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  12. final def ne(arg0: AnyRef): Boolean

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  13. final def notify(): Unit

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  14. final def notifyAll(): Unit

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  15. implicit def optionDependableToDependable(maybe: Option[Dependable]): Dependable

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    Implicit that will convert an Option[Dependable] to a Dependable when needed.

  16. final def synchronized[T0](arg0: ⇒ T0): T0

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  17. def toString(): String

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  18. final def wait(): Unit

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  19. final def wait(arg0: Long, arg1: Int): Unit

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  20. final def wait(arg0: Long): Unit

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