Object

dagr.tasks.misc

Tabix

Related Doc: package misc

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object Tabix extends Configuration

Tabix (https://github.com/samtools/htslib)

Linear Supertypes
Configuration, ConfigurationLike, LazyLogging, AnyRef, Any
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Inherited
  1. Tabix
  2. Configuration
  3. ConfigurationLike
  4. LazyLogging
  5. AnyRef
  6. Any
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Visibility
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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val TabixExecutableConfigKey: String

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def asType[T](path: String)(implicit arg0: scala.reflect.api.JavaUniverse.TypeTag[T]): T

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    Attributes
    protected
    Definition Classes
    ConfigurationLike

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def commandLineName(name: String): String

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    Definition Classes
    ConfigurationLike

  9. def config: Config

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    Attributes
    protected
    Definition Classes
    Configuration → ConfigurationLike

  10. def configure[T](path: String, defaultValue: T)(implicit arg0: scala.reflect.api.JavaUniverse.TypeTag[T]): T

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    Definition Classes
    ConfigurationLike

  11. def configure[T](path: String)(implicit arg0: scala.reflect.api.JavaUniverse.TypeTag[T]): T

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    Definition Classes
    ConfigurationLike

  12. def configureExecutable(path: String, executable: String): Path

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    Definition Classes
    ConfigurationLike

  13. def configureExecutableFromBinDirectory(binPath: String, executable: String, subDir: Option[Path]): Path

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    Definition Classes
    ConfigurationLike

  14. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  15. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  16. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  17. def findTabix: Path

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  18. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  19. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  20. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  21. lazy val logger: Logger

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    Attributes
    protected
    Definition Classes
    LazyLogging

  22. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  23. final def notify(): Unit

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    Definition Classes
    AnyRef

  24. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  25. def optionallyConfigure[T](path: String)(implicit arg0: scala.reflect.api.JavaUniverse.TypeTag[T]): Option[T]

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    Definition Classes
    ConfigurationLike

  26. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  27. def systemPath: Seq[Path]

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    Attributes
    protected
    Definition Classes
    ConfigurationLike

  28. def toString(): String

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    Definition Classes
    AnyRef → Any

  29. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Configuration

Inherited from ConfigurationLike

Inherited from LazyLogging

Inherited from AnyRef

Inherited from Any

Ungrouped