Class

dagr.tasks.picard

CopyBaiToBamBai

Related Doc: package picard

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class CopyBaiToBamBai extends ShellCommand

Linear Supertypes
ShellCommand, FixedResources, ScheduleWithEmptyDefaultResources, ProcessTask, UnitTask, Schedulable, LazyLogging, Task, Dependable, AnyRef, Any
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Inherited
  1. CopyBaiToBamBai
  2. ShellCommand
  3. FixedResources
  4. ScheduleWithEmptyDefaultResources
  5. ProcessTask
  6. UnitTask
  7. Schedulable
  8. LazyLogging
  9. Task
  10. Dependable
  11. AnyRef
  12. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new CopyBaiToBamBai(bam: PathToBam)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. def !=>(other: Dependable): Unit

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    Definition Classes
    Task → Dependable

  3. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  4. def +(other: String): String

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to any2stringadd[CopyBaiToBamBai] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd

  5. def ->[B](y: B): (CopyBaiToBamBai, B)

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to ArrowAssoc[CopyBaiToBamBai] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()

  6. def ::(other: Option[Dependable]): Dependable

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    Definition Classes
    Dependable

  7. def ::(other: Dependable): Dependable

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    Definition Classes
    Dependable

  8. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  9. final def ==>(other: Option[Dependable]): Dependable

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    Definition Classes
    Dependable

  10. final def ==>(other: Dependable): Dependable

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    Definition Classes
    Dependable

  11. def addDependent(dependent: Dependable): Unit

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    Definition Classes
    Task → Dependable

  12. def allTasks: Traversable[Task]

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    Definition Classes
    Task → Dependable

  13. def applyResources(resources: ResourceSet): Unit

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    Definition Classes
    UnitTask → Schedulable

  14. def args: Seq[Any]

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    Definition Classes
    ShellCommand → ProcessTask

  15. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  16. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  17. val commands: String*

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    Definition Classes
    ShellCommand

  18. def ensuring(cond: (CopyBaiToBamBai) ⇒ Boolean, msg: ⇒ Any): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  19. def ensuring(cond: (CopyBaiToBamBai) ⇒ Boolean): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  20. def ensuring(cond: Boolean, msg: ⇒ Any): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  21. def ensuring(cond: Boolean): CopyBaiToBamBai

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  22. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  23. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  24. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  25. def formatted(fmtstr: String): String

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to StringFormat[CopyBaiToBamBai] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()

  26. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  27. final def getTasks: Traversable[_ <: CopyBaiToBamBai.this.type]

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    Definition Classes
    UnitTask → Task

  28. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  29. def headTasks: Traversable[Task]

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    Definition Classes
    Task → Dependable

  30. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  31. lazy val logger: Logger

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    Attributes
    protected
    Definition Classes
    LazyLogging

  32. var name: String

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    Definition Classes
    Task

  33. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  34. final def notify(): Unit

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    Definition Classes
    AnyRef

  35. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  36. def onComplete(exitCode: Int): Boolean

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    Definition Classes
    Task

  37. def pickResources(availableResources: ResourceSet): Option[ResourceSet]

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    Definition Classes
    FixedResources → Schedulable

  38. var quoteIfNecessary: Boolean

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    Attributes
    protected
    Definition Classes
    ProcessTask

  39. def removeDependency(task: Task): Boolean

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    Definition Classes
    Task

  40. def requires(cores: Double, memory: String): CopyBaiToBamBai.this.type

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    Definition Classes
    FixedResources

  41. def requires(cores: Cores, memory: Memory): CopyBaiToBamBai.this.type

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    Definition Classes
    FixedResources

  42. def requires(resources: ResourceSet): CopyBaiToBamBai.this.type

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    Definition Classes
    FixedResources

  43. def resources: ResourceSet

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    Definition Classes
    ScheduleWithEmptyDefaultResources

  44. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  45. def tailTasks: Traversable[Task]

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    Definition Classes
    Task → Dependable

  46. def tasksDependedOn: Traversable[Task]

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    Attributes
    protected[dagr.core]
    Definition Classes
    Task

  47. def tasksDependingOnThisTask: Traversable[Task]

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    Attributes
    protected[dagr.core]
    Definition Classes
    Task

  48. def toString(): String

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    Definition Classes
    ProcessTask → AnyRef → Any

  49. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  50. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  51. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  52. def withName(name: String): CopyBaiToBamBai.this.type

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    Definition Classes
    Task

  53. def →[B](y: B): (CopyBaiToBamBai, B)

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    Implicit information
    This member is added by an implicit conversion from CopyBaiToBamBai to ArrowAssoc[CopyBaiToBamBai] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from ShellCommand

Inherited from FixedResources

Inherited from ScheduleWithEmptyDefaultResources

Inherited from ProcessTask

Inherited from UnitTask

Inherited from Schedulable

Inherited from LazyLogging

Inherited from Task

Inherited from Dependable

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from CopyBaiToBamBai to any2stringadd[CopyBaiToBamBai]

Inherited by implicit conversion StringFormat from CopyBaiToBamBai to StringFormat[CopyBaiToBamBai]

Inherited by implicit conversion Ensuring from CopyBaiToBamBai to Ensuring[CopyBaiToBamBai]

Inherited by implicit conversion ArrowAssoc from CopyBaiToBamBai to ArrowAssoc[CopyBaiToBamBai]

Ungrouped