CalculateDownsamplingProportion
misc
CallDuplexConsensusReads
fgbio
CallMolecularConsensusReads
fgbio
Chained
DownsamplingStrategy
CheckIlluminaDirectory
picard
CleanSam
picard
ClipOverlappingReads
fgbio
CollectAlignmentSummaryMetrics
picard
CollectBaseDistributionByCycle
picard
CollectDuplexSeqMetrics
fgbio
CollectGcBiasMetrics
picard
CollectHsMetrics
picard
CollectIlluminaBasecallingMetrics
picard
CollectIlluminaLaneMetrics
picard
CollectInsertSizeMetrics
picard
CollectMultipleMetrics
picard
CollectQualityYieldMetrics
picard
CollectSequencingArtifactMetrics
picard
CollectTargetedPcrMetrics
picard
CollectVariantCallingMetrics
picard
CollectWgsMetrics
picard
ConstantMemory
DownsamplingStrategy
CopyBaiToBamBai
picard
callSample
GenotypeConcordance
callStatsOutput
Mutect1
callVcf
GenotypeConcordance
clippingAttribute
ExtractUmisFromBam
command
SamtoolsTask
commandName
FgBioTask PicardTask
compress
FilterFreeBayesCalls FreeBayes
compressionLevel
FgBioTask PicardTask
configFile
Strelka
contaminationFraction
HaplotypeCaller
contextSize
CollectSequencingArtifactMetrics
createIndex
PicardTask
createMd5File
PicardTask