UpdateVcfSequenceDictionary

picard

umiTags

ExtractUmisFromBam

unique

IntervalListTools

unmappedBam

BwaBacktrack

useAdvancedGcOptions

PicardTask

useAsyncIo

PicardTask

useBestNAlleles

FreeBayes FreeBayesParallel

useNativePairHmm

HaplotypeCaller