Object

com.fulcrumgenomics.util.NumericTypes

PhredScore

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object PhredScore

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val MaxValue: PhredScore

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    The maximum Phred Value.

  5. val MinValue: PhredScore

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  6. val Precision: Double

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    The precision to use when converting to an Integer.

  7. final def asInstanceOf[T0]: T0

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  8. def cap(score: Int): PhredScore

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    Caps the scores to the range MinValue..MaxValue.

  9. def cap(score: PhredScore): PhredScore

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    Caps the scores to the range MinValue..MaxValue.

  10. def clone(): AnyRef

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  11. final def eq(arg0: AnyRef): Boolean

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  12. def equals(arg0: Any): Boolean

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  13. def finalize(): Unit

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  14. def fromLinearProbability(p: Double): PhredScore

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    Converts a linear (i.e.

    Converts a linear (i.e. non-log) probability to a phred score.

  15. def fromLogProbability(lnProbError: LogProbability): PhredScore

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    Converts a probability (log-space) to a phred score.

  16. final def getClass(): Class[_]

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  17. def hashCode(): Int

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  18. final def isInstanceOf[T0]: Boolean

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  19. final def ne(arg0: AnyRef): Boolean

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  20. final def notify(): Unit

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  21. final def notifyAll(): Unit

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  22. final def synchronized[T0](arg0: ⇒ T0): T0

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  23. def toFastq(score: PhredScore): Byte

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    Converts a numeric phred score to a one-byte character with a +33 offset.

  24. def toString(): String

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  25. final def wait(): Unit

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  26. final def wait(arg0: Long, arg1: Int): Unit

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  27. final def wait(arg0: Long): Unit

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