Class

com.fulcrumgenomics.bam.api.SamOrder

TemplateCoordinateKey

Related Doc: package SamOrder

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case class TemplateCoordinateKey(refIndex1: Int, refIndex2: Int, pos1: Int, pos2: Int, neg1: Boolean, neg2: Boolean, name: String, isLowerOfPair: Boolean, library: String) extends Ordered[TemplateCoordinateKey] with Product with Serializable

Sorting key used by the TemplateCoordinate sort.

Linear Supertypes
Serializable, Serializable, Product, Equals, Ordered[TemplateCoordinateKey], Comparable[TemplateCoordinateKey], AnyRef, Any
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Inherited
  1. TemplateCoordinateKey
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Ordered
  7. Comparable
  8. AnyRef
  9. Any
Implicitly
  1. by orderingToOrdered
  2. by any2stringadd
  3. by StringFormat
  4. by Ensuring
  5. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new TemplateCoordinateKey(refIndex1: Int, refIndex2: Int, pos1: Int, pos2: Int, neg1: Boolean, neg2: Boolean, name: String, isLowerOfPair: Boolean, library: String)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def +(other: String): String

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to any2stringadd[TemplateCoordinateKey] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd

  4. def ->[B](y: B): (TemplateCoordinateKey, B)

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to ArrowAssoc[TemplateCoordinateKey] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()

  5. def <(that: TemplateCoordinateKey): Boolean

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    Definition Classes
    Ordered

  6. def <=(that: TemplateCoordinateKey): Boolean

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    Definition Classes
    Ordered

  7. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  8. def >(that: TemplateCoordinateKey): Boolean

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    Definition Classes
    Ordered

  9. def >=(that: TemplateCoordinateKey): Boolean

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    Definition Classes
    Ordered

  10. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  11. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  12. def compare(that: TemplateCoordinateKey): Int

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    Definition Classes
    TemplateCoordinateKey → Ordered

  13. def compareTo(that: TemplateCoordinateKey): Int

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    Definition Classes
    Ordered → Comparable

  14. def ensuring(cond: (TemplateCoordinateKey) ⇒ Boolean, msg: ⇒ Any): TemplateCoordinateKey

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  15. def ensuring(cond: (TemplateCoordinateKey) ⇒ Boolean): TemplateCoordinateKey

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  16. def ensuring(cond: Boolean, msg: ⇒ Any): TemplateCoordinateKey

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  17. def ensuring(cond: Boolean): TemplateCoordinateKey

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  18. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  19. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  20. def formatted(fmtstr: String): String

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to StringFormat[TemplateCoordinateKey] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()

  21. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  22. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  23. val isLowerOfPair: Boolean

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  24. val library: String

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  25. val name: String

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  26. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  27. val neg1: Boolean

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  28. val neg2: Boolean

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  29. final def notify(): Unit

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    Definition Classes
    AnyRef

  30. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  31. val pos1: Int

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  32. val pos2: Int

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  33. val refIndex1: Int

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  34. val refIndex2: Int

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  35. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  36. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  37. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  38. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. def →[B](y: B): (TemplateCoordinateKey, B)

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to ArrowAssoc[TemplateCoordinateKey] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Shadowed Implicit Value Members

  1. def <(that: TemplateCoordinateKey): Boolean

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).<(that)
    Definition Classes
    Ordered

  2. def <=(that: TemplateCoordinateKey): Boolean

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).<=(that)
    Definition Classes
    Ordered

  3. def >(that: TemplateCoordinateKey): Boolean

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).>(that)
    Definition Classes
    Ordered

  4. def >=(that: TemplateCoordinateKey): Boolean

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).>=(that)
    Definition Classes
    Ordered

  5. def compare(that: TemplateCoordinateKey): Int

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).compare(that)
    Definition Classes
    Ordered

  6. def compareTo(that: TemplateCoordinateKey): Int

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    Implicit information
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).compareTo(that)
    Definition Classes
    Ordered → Comparable

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Ordered[TemplateCoordinateKey]

Inherited from Comparable[TemplateCoordinateKey]

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion orderingToOrdered from TemplateCoordinateKey to Ordered[TemplateCoordinateKey]

Inherited by implicit conversion any2stringadd from TemplateCoordinateKey to any2stringadd[TemplateCoordinateKey]

Inherited by implicit conversion StringFormat from TemplateCoordinateKey to StringFormat[TemplateCoordinateKey]

Inherited by implicit conversion Ensuring from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey]

Inherited by implicit conversion ArrowAssoc from TemplateCoordinateKey to ArrowAssoc[TemplateCoordinateKey]

Ungrouped