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com.fulcrumgenomics.util

ReadStructure

Related Docs: class ReadStructure | package util

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object ReadStructure

Companion object for ReadStructure that provides factory methods.

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Type Members

  1. sealed trait SubRead extends AnyRef

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    Contains the bases and optionally base qualities that correspond to the given read segment.

  2. case class SubReadWithQuals(bases: String, quals: String, segment: ReadSegment) extends SubRead with Product with Serializable

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  3. case class SubReadWithoutQuals(bases: String, segment: ReadSegment) extends SubRead with Product with Serializable

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val AnyLengthChar: Char

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    A character that can be put in place of a number in a read structure to mean "0 or more bases".

  5. def apply(readStructure: String): ReadStructure

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    Creates a read structure from a string

  6. def apply(segments: Seq[ReadSegment], resetOffsets: Boolean = false): ReadStructure

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    Creates a new ReadStructure, optionally resetting the offsets on each of the segments.

  7. final def asInstanceOf[T0]: T0

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  8. def clone(): AnyRef

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  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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