Strategy

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. object Adjacency extends Strategy with Product with Serializable

   

   Strategy based on the directed adjacency method described in [umi_tools](http://dx.doi.org/10.1101/051755) that allows for errors between UMIs but only when there is a count gradient.

5. object Edit extends Strategy with Product with Serializable

   

   Strategy to cluster reads into groups based on mismatches between reads in clusters.

6. object Identity extends Strategy with Product with Serializable

   

   Strategy to only reads with identical UMI sequences are grouped together.

7. object Paired extends Strategy with Product with Serializable

   

   Strategy similar to the Adjacency strategy similar to adjacency but for methods that produce template with a pair of UMIs such that a read with A-B is related to but not identical to a read with B-A.

8. def apply(name: String): Strategy

   

   The string constructor method that enables us to create the case object instance by name.

   The string constructor method that enables us to create the case object instance by name.

   Definition Classes

   FgBioEnum

9. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

10. def clone(): AnyRef

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

11. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

12. def equals(arg0: Any): Boolean

    

    Definition Classes

    AnyRef → Any

13. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

14. macro def findValues: IndexedSeq[Strategy]

    

    Attributes

    protected

    Definition Classes

    Enum

15. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

16. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

17. def indexOf(member: Strategy): Int

    

    Definition Classes

    Enum

18. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

19. final lazy val lowerCaseNamesToValuesMap: Map[String, Strategy]

    

    Definition Classes

    Enum

20. final lazy val namesToValuesMap: Map[String, Strategy]

    

    Definition Classes

    Enum

21. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

22. final def notify(): Unit

    

    Definition Classes

    AnyRef

23. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

24. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

25. def toString(): String

    

    Definition Classes

    AnyRef → Any

26. final lazy val upperCaseNameValuesToMap: Map[String, Strategy]

    

    Definition Classes

    Enum

27. def values: IndexedSeq[Strategy]

    

    Definition Classes

    Strategy → Enum

28. final lazy val valuesToIndex: Map[Strategy, Int]

    

    Definition Classes

    Enum

29. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

30. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

31. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

32. def withName(name: String): Strategy

    

    Definition Classes

    Enum

    Annotations

    @SuppressWarnings()

33. def withNameInsensitive(name: String): Strategy

    

    Definition Classes

    Enum

    Annotations

    @SuppressWarnings()

34. def withNameInsensitiveOption(name: String): Option[Strategy]

    

    Definition Classes

    Enum

35. def withNameLowercaseOnly(name: String): Strategy

    

    Definition Classes

    Enum

    Annotations

    @SuppressWarnings()

36. def withNameLowercaseOnlyOption(name: String): Option[Strategy]

    

    Definition Classes

    Enum

37. def withNameOption(name: String): Option[Strategy]

    

    Definition Classes

    Enum

38. def withNameUppercaseOnly(name: String): Strategy

    

    Definition Classes

    Enum

    Annotations

    @SuppressWarnings()

39. def withNameUppercaseOnlyOption(name: String): Option[Strategy]

    

    Definition Classes

    Enum