Object

com.fulcrumgenomics.util

Rscript

Related Doc: package util

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object Rscript extends LazyLogging

Object that enables running of R scripts via the Rscript command line too.

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Type Members

  1. case class RscriptException(status: Int) extends RuntimeException with Product with Serializable

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    Exception class that holds onto an executable's exit/status code.

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. lazy val Available: Boolean

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    Returns true if R is available and false otherwise.

  5. final def asInstanceOf[T0]: T0

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  6. def clone(): AnyRef

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    protected[java.lang]
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    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

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  8. def equals(arg0: Any): Boolean

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  9. def exec(script: Path, args: String*): Try[Unit]

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    Executes an Rscript from a script stored at a Path.

  10. def exec(scriptResource: String, args: String*): Try[Unit]

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    Executes an Rscript from the classpath.

  11. def execIfAvailable(script: Path, args: String*): Try[Unit]

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    Executes an Rscript from a script stored at a Path if Rscript is available.

  12. def execIfAvailable(scriptResource: String, args: String*): Try[Unit]

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    Executes an Rscript from the classpath if Rscript is available.

  13. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  14. final def getClass(): Class[_]

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  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

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  17. lazy val logger: Logger

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    protected
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  18. final def ne(arg0: AnyRef): Boolean

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  19. final def notify(): Unit

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  20. final def notifyAll(): Unit

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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  22. def toString(): String

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  23. final def wait(): Unit

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    @throws( ... )
  24. final def wait(arg0: Long, arg1: Int): Unit

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  25. final def wait(arg0: Long): Unit

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Inherited from LazyLogging

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