Writer
fulcrumgenomics
withBaseFilter
PileupBuilder
withPhaseSet
BlockInfo
withReadFilter
PileupBuilder
withVariableLastSegment
ReadStructure
withoutIndels
Pileup
withoutOverlaps
Pileup
worst_structure_dbn
IndexMetric
worst_structure_delta_g
IndexMetric
worst_structure_seq
IndexMetric
write
Writer
SamWriter
FastqWriter
SamBuilder
VariantContextSetBuilder
Metric
MetricWriter
Sorter
writer
Metric
MetricWriter