case class PoolingFractionMetric(sample: String, variant_sites: Int, singletons: Int, estimated_fraction: Double, standard_error: Double, ci99_low: Double, ci99_high: Double) extends Metric with Product with Serializable
Metric to report out the estimated fraction of a pooled sample that comes from a specific sample.
- sample
the sample within the pool being reported on
- variant_sites
how many sites were examined at which the reported sample is known to be variant
- singletons
how many of the variant sites were sites at which only this sample was variant
- estimated_fraction
the estimated fraction of the pool that comes from this sample
- standard_error
the standard error of the estimated fraction
- ci99_low
the lower bound of the 99% confidence interval for the estimated fraction
- ci99_high
the upper bound of the 99% confidence interval for the estimated fraction
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Instance Constructors
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new
PoolingFractionMetric(sample: String, variant_sites: Int, singletons: Int, estimated_fraction: Double, standard_error: Double, ci99_low: Double, ci99_high: Double)
- sample
the sample within the pool being reported on
- variant_sites
how many sites were examined at which the reported sample is known to be variant
- singletons
how many of the variant sites were sites at which only this sample was variant
- estimated_fraction
the estimated fraction of the pool that comes from this sample
- standard_error
the standard error of the estimated fraction
- ci99_low
the lower bound of the 99% confidence interval for the estimated fraction
- ci99_high
the upper bound of the 99% confidence interval for the estimated fraction
Value Members
-
final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to any2stringadd[PoolingFractionMetric] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
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def
->[B](y: B): (PoolingFractionMetric, B)
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to ArrowAssoc[PoolingFractionMetric] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
- Annotations
- @inline()
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final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val ci99_high: Double
- val ci99_low: Double
-
def
clone(): AnyRef
- Attributes
- protected[java.lang]
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- @throws( ... )
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def
ensuring(cond: (PoolingFractionMetric) ⇒ Boolean, msg: ⇒ Any): PoolingFractionMetric
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to Ensuring[PoolingFractionMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: (PoolingFractionMetric) ⇒ Boolean): PoolingFractionMetric
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to Ensuring[PoolingFractionMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean, msg: ⇒ Any): PoolingFractionMetric
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to Ensuring[PoolingFractionMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): PoolingFractionMetric
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to Ensuring[PoolingFractionMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
- val estimated_fraction: Double
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def
finalize(): Unit
- Attributes
- protected[java.lang]
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- @throws( classOf[java.lang.Throwable] )
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def
formatValues(value: Any): String
Override this method to customize how values are formatted.
Override this method to customize how values are formatted.
- Attributes
- protected
- Definition Classes
- Metric
-
def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to StringFormat[PoolingFractionMetric] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
- Annotations
- @inline()
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final
def
getClass(): Class[_]
- Definition Classes
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
-
def
names: Seq[String]
Get the names of the arguments in the order they were defined.
Get the names of the arguments in the order they were defined.
- Definition Classes
- Metric
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final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
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final
def
notify(): Unit
- Definition Classes
- AnyRef
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final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
- val sample: String
- val singletons: Int
- val standard_error: Double
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
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-
def
toString(): String
- Definition Classes
- Metric → AnyRef → Any
-
def
values: Seq[String]
Get the values of the arguments in the order they were defined.
Get the values of the arguments in the order they were defined.
- Definition Classes
- Metric
- val variant_sites: Int
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final
def
wait(): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
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final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
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- Annotations
- @throws( ... )
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final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
→[B](y: B): (PoolingFractionMetric, B)
- Implicit
- This member is added by an implicit conversion from PoolingFractionMetric to ArrowAssoc[PoolingFractionMetric] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc