Packages

package fasta

Ordering
  1. Alphabetic
Visibility
  1. Public
  2. All

Type Members

  1. class HardMaskFasta extends FgBioTool with LazyLogging

    Tool to take in a FASTA file and convert soft-masked (i.e.

    Tool to take in a FASTA file and convert soft-masked (i.e. lower-case) sequence to hard-masked sequence (i.e. Ns), for tools that cannot correctly interpret soft-masking.

    Annotations
    @ClpAnnotation()
  2. class ReferenceSequenceIterator extends Iterator[ReferenceSequence]

    Simple Iterator that wraps a ReferenceSequence and provides a standard Iterator over all the reference sequences in order.

Value Members

  1. object ReferenceSequenceIterator

Ungrouped