sealed trait ReadSegment extends AnyRef

Base for all types of segments of a read

Linear Supertypes
AnyRef, Any
Known Subclasses
MolecularBarcode, SampleBarcode, Skip, Template
Ordering
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  2. By Inheritance
Inherited
  1. ReadSegment
  2. AnyRef
  3. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Abstract Value Members

  1. abstract def length: Int

    The length of this segment.

  2. abstract def offset: Int

    The number of bases in the read preceding this segment.

  3. abstract def symbol: Char

    The single-character symbol representing this segment.

Concrete Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from ReadSegment to any2stringadd[ReadSegment] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (ReadSegment, B)
    Implicit
    This member is added by an implicit conversion from ReadSegment to ArrowAssoc[ReadSegment] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  6. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  7. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. def ensuring(cond: (ReadSegment) ⇒ Boolean, msg: ⇒ Any): ReadSegment
    Implicit
    This member is added by an implicit conversion from ReadSegment to Ensuring[ReadSegment] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  9. def ensuring(cond: (ReadSegment) ⇒ Boolean): ReadSegment
    Implicit
    This member is added by an implicit conversion from ReadSegment to Ensuring[ReadSegment] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  10. def ensuring(cond: Boolean, msg: ⇒ Any): ReadSegment
    Implicit
    This member is added by an implicit conversion from ReadSegment to Ensuring[ReadSegment] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  11. def ensuring(cond: Boolean): ReadSegment
    Implicit
    This member is added by an implicit conversion from ReadSegment to Ensuring[ReadSegment] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  12. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  14. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  15. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from ReadSegment to StringFormat[ReadSegment] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  16. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  17. def hashCode(): Int
    Definition Classes
    AnyRef → Any
  18. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  19. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  20. final def notify(): Unit
    Definition Classes
    AnyRef
  21. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  22. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  23. def toString(): String

    Provides a string representation of this segment (ex.

    Provides a string representation of this segment (ex. "23T" or "4M").

    Definition Classes
    ReadSegment → AnyRef → Any
  24. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  25. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. def →[B](y: B): (ReadSegment, B)
    Implicit
    This member is added by an implicit conversion from ReadSegment to ArrowAssoc[ReadSegment] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from ReadSegment to any2stringadd[ReadSegment]

Inherited by implicit conversion StringFormat from ReadSegment to StringFormat[ReadSegment]

Inherited by implicit conversion Ensuring from ReadSegment to Ensuring[ReadSegment]

Inherited by implicit conversion ArrowAssoc from ReadSegment to ArrowAssoc[ReadSegment]

Ungrouped