Object

nl.biopet.tools.bamstats

FlagMethods

Related Doc: package bamstats

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object FlagMethods extends Enumeration

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Enumeration, Serializable, Serializable, AnyRef, Any
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  1. FlagMethods
  2. Enumeration
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Type Members

  1. case class Val(method: (SAMRecord) ⇒ Boolean) extends FlagMethods.Val with Product with Serializable

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    protected

  2. abstract class Value extends Ordered[Value] with Serializable

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    @SerialVersionUID()

  3. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

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    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def Value(i: Int, name: String): Value

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    Enumeration

  5. final def Value(name: String): Value

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    Enumeration

  6. final def Value(i: Int): Value

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  7. final def Value: Value

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  8. object ValueSet extends Serializable

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  9. final def apply(x: Int): Value

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    Enumeration

  10. final def asInstanceOf[T0]: T0

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    Any

  11. def clone(): AnyRef

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    protected[java.lang]
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    AnyRef
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    @throws( ... )

  12. val duplicate: Val

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  13. final def eq(arg0: AnyRef): Boolean

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    AnyRef

  14. def equals(arg0: Any): Boolean

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  15. def finalize(): Unit

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    protected[java.lang]
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    AnyRef
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    @throws( classOf[java.lang.Throwable] )

  16. val firstInvertedSecondInverted: Val

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  17. val firstInvertedSecondNormal: Val

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  18. val firstNormalSecondInverted: Val

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  19. val firstNormalSecondNormal: Val

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  20. val firstOfPair: Val

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  21. final def getClass(): Class[_]

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  22. def hashCode(): Int

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  23. final def isInstanceOf[T0]: Boolean

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  24. val mapped: Val

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  25. def mappingQualityGreaterThan(mappingQuality: Int): Val

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  26. val mappingQualityGreaterThan10: Val

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  27. val mappingQualityGreaterThan20: Val

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  28. val mappingQualityGreaterThan30: Val

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  29. val mappingQualityGreaterThan40: Val

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  30. val mappingQualityGreaterThan50: Val

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  31. val mappingQualityGreaterThan60: Val

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  32. val mateInSameStrand: Val

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  33. val mateNegativeStrand: Val

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  34. val mateOnOtherChromosome: Val

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  35. val mateUnmapped: Val

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  36. final def maxId: Int

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  37. def nameToVal(name: String): Value

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  38. def nameToValOption(name: String): Option[Value]

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  39. final def ne(arg0: AnyRef): Boolean

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  40. var nextId: Int

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  41. var nextName: Iterator[String]

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  42. val notPrimaryAlignment: Val

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  43. final def notify(): Unit

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  44. final def notifyAll(): Unit

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    AnyRef

  45. val properPair: Val

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  46. val readFailsVendorQualityCheck: Val

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  47. val readNegativeStrand: Val

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  48. val readPaired: Val

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  49. def readResolve(): AnyRef

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  50. val secondOfPair: Val

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  51. val supplementaryAlignment: Val

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  52. final def synchronized[T0](arg0: ⇒ T0): T0

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  53. def toString(): String

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    Enumeration → AnyRef → Any

  54. val total: Val

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  55. implicit def valueToVal(x: Value): Val

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  56. def values: ValueSet

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    Enumeration

  57. final def wait(): Unit

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    @throws( ... )

  58. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  59. final def wait(arg0: Long): Unit

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    @throws( ... )

  60. final def withName(s: String): Value

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Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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