BamstatsRoot

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

5. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

6. final def eq(arg0: AnyRef): Boolean

   

   Definition Classes

   AnyRef

7. def equals(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

8. def finalize(): Unit

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

9. def fromFile(file: File): BamstatsRoot

   

   Create a new BamstatsRoot from a json file.

   Create a new BamstatsRoot from a json file.

   file

   a file in json format

   returns

   a BamstatsRoot object

10. def fromGroupStats(groupID: GroupID, groupStats: GroupStats): BamstatsRoot

    

    Uses a groupID and groupstats to create a new BamstatsRoot

    Uses a groupID and groupstats to create a new BamstatsRoot

    groupID

    the unique identifier consisting of a sample, library and readgroup ID.

    groupStats

    the stats for the readgroup

    returns

    a BamstatsRoot object

11. def fromJson(json: JsValue): BamstatsRoot

    

    Create a new BamstatsRoot from json

    Create a new BamstatsRoot from json

    json

    the JsValue containing the json information

    returns

    A BamstatsRoot object

12. def fromStats(stats: Stats): BamstatsRoot

    

    Converts a stats object into a BamstatsRoot object

    Converts a stats object into a BamstatsRoot object

    stats

    a Stats object containing a group ID and readgroupData

    returns

    a BamstatsRoot object

13. def fromStatsList(groups: List[Stats]): BamstatsRoot

    

    Converts a list of stats to a bamstatsRoots object.

    Converts a list of stats to a bamstatsRoots object. Merges stats from the same readgroup

    groups

    A list of stats objects

    returns

    a BamstatsRoot object

14. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

15. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

16. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

17. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

18. final def notify(): Unit

    

    Definition Classes

    AnyRef

19. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

20. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

21. def toString(): String

    

    Definition Classes

    AnyRef → Any

22. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

23. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

24. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )