Class

nl.biopet.utils.ngs.vcf

BiopetVariantContext

Related Doc: package vcf

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implicit class BiopetVariantContext extends AnyRef

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Instance Constructors

  1. new BiopetVariantContext(record: VariantContext)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  7. def equals(arg0: Any): Boolean

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  8. def finalize(): Unit

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  9. def getAttAsString(key: String, method: FieldMethod.Value = FieldMethod.All.asInstanceOf): List[String]

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    Look up a list of Strings in the info fields

    Look up a list of Strings in the info fields

    key

    Key to look up in the info fields

    method

    methods to apply on list, default returns all values

  10. final def getClass(): Class[_]

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  11. def getLongestAlleleSize: Int

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    Return longest allele of VariantContext.

    Return longest allele of VariantContext.

    returns

    length of the allele with the most nucleotides

  12. def hashCode(): Int

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  13. def identicalVariantContext(other: VariantContext): Boolean

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    Compare to an other VariantContext

  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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