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smfsb

Abc

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object Abc

Functions for parameter inference using ABC (and ABC-SMC) methods

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  15. def run[P](n: Int, rprior: ⇒ P, dist: (P) ⇒ Double): GenSeq[(P, Double)]

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    Function for running ABC simulations in parallel on all cores.

    Function for running ABC simulations in parallel on all cores. This function simply carries out the runs. No post-processing (including rejection) is carried out.

    n

    The number of ABC simulations to be carried out

    rprior

    Function returing a single simulated parameter value from a prior

    dist

    Function that takes a single parameter value and runs a forward simulation from the model, then computes distance of output from a target data set

    returns

    The collection of generated parameters together with their simulated distances from a target data set

  16. def summary[P](output: GenSeq[(P, Double)])(implicit arg0: CsvRow[P]): Unit

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    Generate some basic diagnostics associated with an ABC run.

    Generate some basic diagnostics associated with an ABC run. Called purely for the side effect of generating output on the console.

    output

    Collection of runs (and distances) such as generated from run

  17. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. final def wait(): Unit

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  21. final def wait(arg0: Long): Unit

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