Object

smfsb

Mll

Related Doc: package smfsb

Permalink

object Mll

Functions associated with particle filtering of Markov process models against time series data and the computation of marginal model likelihoods.

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Mll
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  5. def bpf[S, O](x0: Vector[S], t0: Time, data: Ts[O], dataLik: (S, O) ⇒ LogLik, stepFun: (S, Time, Time) ⇒ S)(implicit arg0: State[S]): (LogLik, Time, Vector[S])

    Permalink

    A simple bootstrap particle filter with multinomial resampling.

    A simple bootstrap particle filter with multinomial resampling. Note that it supports time series of observations on irregular time grids. Note that this is the function which does most of the work for pfMll.

    x0

    A sample from the prior on the state at time t0. The size of the sample determines the number of particles used in the particle filter.

    t0

    The time corresponding to the prior sample

    data

    The observed data in the form of a time series

    dataLik

    The log-likelihood of the observation model

    stepFun

    The transition kernel of the underlying process

    returns

    A triple: the first element is the log of an unbiased estimate of the marginal likelihood of the model, the second is just the final time point, and the third is a sample from the posterior distribution of the final time point.

  6. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  11. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  12. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  13. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  14. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  15. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  16. def pfMll[P, S, O](simX0: (P) ⇒ Vector[S], t0: Time, stepFun: (P) ⇒ (S, Time, Time) ⇒ S, dataLik: (P) ⇒ (S, O) ⇒ LogLik, data: Ts[O])(implicit arg0: State[S]): (P) ⇒ LogLik

    Permalink

    A function for evaluating marginal log-likelihoods of parametrised models.

    A function for evaluating marginal log-likelihoods of parametrised models. It basically just threads a parameter value through the arguments required for bpf.

    simX0

    A function which when provided with a parameter value will return a sample from the prior on the intial state of a Markov process model. The size of the sample will determine the number of particles used in the particle filter.

    t0

    The intial time corresponding to the prior sample

    stepFun

    A function, which when provided with a parameter value, will return the transition kernel of a Markov process.

    dataLik

    A function, which when provided with a parameter value, will return the log-likelihood of the observation model

    data

    The observed data in the form of a time series

  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  18. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AnyRef

Inherited from Any

Ungrouped