commands

class CountAlignments extends BDGSparkCommand[CountAlignmentsArgs] with Logging

Count alignments ADAM command.
class CountAlignmentsArgs extends Args4jBase
class CountAlignmentsPerRead extends BDGSparkCommand[CountAlignmentsPerReadArgs] with Logging

Count alignments per read ADAM command.
class CountAlignmentsPerReadArgs extends Args4jBase
final class JavaADAMCommands extends AnyRef
final class JavaCountAlignments extends Runnable with Serializable
final class JavaCountAlignmentsPerRead extends Runnable with Serializable

object ADAMCommandsGuiceMain

Add external commands to ADAM command line interface via Guice injection.
object ADAMCommandsMain

Add external commands to ADAM command line interface.
object CountAlignments extends BDGCommandCompanion
object CountAlignmentsPerRead extends BDGCommandCompanion