Class/Object

com.github.heuermh.adam.gfa.sql.gfa1

Link

Related Docs: object Link | package gfa1

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case class Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag]) extends Product with Serializable

GFA 1.0 link case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
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  2. By Inheritance
Inherited
  1. Link
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def asJava(): org.dishevelled.bio.assembly.gfa1.Link

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  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. val fragmentCount: Option[Int]

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  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  11. val id: String

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  12. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  13. val kmerCount: Option[Int]

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  14. val mappingQuality: Option[Int]

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  15. val mismatchCount: Option[Int]

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  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  17. final def notify(): Unit

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    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  19. val overlap: String

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  20. val readCount: Option[Int]

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  21. val source: Reference

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  22. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  23. val tags: Map[String, Tag]

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  24. val target: Reference

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  25. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped