Class/Object

com.github.heuermh.adam.gfa.sql.gfa1

Segment

Related Docs: object Segment | package gfa1

Permalink

case class Segment(id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, tags: Map[String, Tag]) extends Product with Serializable

GFA 1.0 segment case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Segment
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new Segment(id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, tags: Map[String, Tag])

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def asJava(): org.dishevelled.bio.assembly.gfa1.Segment

    Permalink

  6. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  8. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. val fragmentCount: Option[Int]

    Permalink

  10. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  11. val id: String

    Permalink

  12. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  13. val kmerCount: Option[Int]

    Permalink

  14. val length: Option[Int]

    Permalink

  15. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  16. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  18. val readCount: Option[Int]

    Permalink

  19. val sequence: String

    Permalink

  20. val sequenceChecksum: String

    Permalink

  21. val sequenceUri: String

    Permalink

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  23. val tags: Map[String, Tag]

    Permalink

  24. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped