case class Gfa1Record(recordType: String, id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 record case class for use in data frames.
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Instance Constructors
- new Gfa1Record(recordType: String, id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], tags: Map[String, Tag])
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- val fragmentCount: Option[Int]
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- val id: String
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- val kmerCount: Option[Int]
- val length: Option[Int]
- val mappingQuality: Option[Int]
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- val ordinal: Option[Int]
- val overlap: String
- val overlaps: Option[Seq[String]]
- val pathName: String
- val readCount: Option[Int]
- val recordType: String
- val segments: Seq[Reference]
- val sequence: String
- val sequenceChecksum: String
- val sequenceUri: String
- val source: Reference
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- val tags: Map[String, Tag]
- val target: Reference
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