case class Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 link case class for use in data frames.
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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- def asJava(): org.dishevelled.bio.assembly.gfa1.Link
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def
clone(): AnyRef
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final
def
eq(arg0: AnyRef): Boolean
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- val fragmentCount: Option[Int]
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final
def
getClass(): Class[_]
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- val id: String
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final
def
isInstanceOf[T0]: Boolean
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- val kmerCount: Option[Int]
- val mappingQuality: Option[Int]
- val mismatchCount: Option[Int]
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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- val overlap: String
- val readCount: Option[Int]
- val source: Reference
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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- val tags: Map[String, Tag]
- val target: Reference
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final
def
wait(arg0: Long, arg1: Int): Unit
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def
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