Packages

case class Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag]) extends Product with Serializable

GFA 1.0 link case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
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  2. By Inheritance
Inherited
  1. Link
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag])

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def asJava(): org.dishevelled.bio.assembly.gfa1.Link
  6. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate() @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. val fragmentCount: Option[Int]
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  10. val id: String
  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. val kmerCount: Option[Int]
  13. val mappingQuality: Option[Int]
  14. val mismatchCount: Option[Int]
  15. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  16. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  17. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  18. val overlap: String
  19. val readCount: Option[Int]
  20. val source: Reference
  21. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  22. val tags: Map[String, Tag]
  23. val target: Reference
  24. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  25. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  26. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @Deprecated @deprecated @throws( classOf[java.lang.Throwable] )
    Deprecated

    (Since version ) see corresponding Javadoc for more information.

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped