htsjdk.samtools.cram.encoding.fastq

Class Template

java.lang.Object

htsjdk.samtools.cram.encoding.fastq.Template

public class Template
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	Template.ByteArrayHashWrapper
static class	Template.Segment
static class	Template.TemplateAssembler
static class	Template.TemplateHash

Field Summary

Fields

Modifier and Type	Field and Description
long	counter
byte[]	name
Template.Segment	segment
byte	size

Constructor Summary

Constructors

Constructor and Description
Template(byte[] name)

Method Summary

Methods

Modifier and Type	Method and Description
void	append(byte[] bases, byte[] scores)
protected int	calculateHashCode()
boolean	equals(java.lang.Object obj)
Template.Segment	getFirstSegment()
Template.Segment	getLastSegment()
int	hashCode()
static void	main(java.lang.String[] args)
void	prepend(byte[] bases, byte[] scores)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

name

public byte[] name

segment

public Template.Segment segment

size

public byte size

counter

public long counter

Constructor Detail

Template

public Template(byte[] name)

Method Detail

append

public void append(byte[] bases,
          byte[] scores)

prepend

public void prepend(byte[] bases,
           byte[] scores)

getLastSegment

public Template.Segment getLastSegment()

getFirstSegment

public Template.Segment getFirstSegment()

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

calculateHashCode

protected int calculateHashCode()

main

public static void main(java.lang.String[] args)