| Class | Description |
|---|---|
| AlignmentSpan |
A span of reads on a single reference.
|
| CompressionHeader | |
| Container | |
| ContainerIO |
Methods to read and write CRAM containers.
|
| CramCompressionRecord | |
| CramHeader |
A starting object when dealing with CRAM files.
|
| EncodingParams | |
| ReadTag |
CRAM counterpart of
SAMTag. |
| Slice |
CRAM slice is a logical union of blocks into for example alignment slices.
|
| SubstitutionMatrix |
| Enum | Description |
|---|---|
| DataSeries |
Represents a specific CRAM record data series and its associated type and unique Content ID
|
| DataSeriesType |
Data series types known to CRAM.
|
| EncodingID |
Encoding ID as specified by Section 3 of the CRAM spec.
|