Package htsjdk.samtools

Class BinningIndexContent.BinList

java.lang.Object
htsjdk.samtools.BinningIndexContent.BinList
All Implemented Interfaces:
Iterable<Bin>
Enclosing class:
BinningIndexContent
public static class BinningIndexContent.BinList extends Object implements Iterable<Bin>
This class is used to encapsulate the list of Bins store in the BAMIndexContent While it is currently represented as an array, we may decide to change it to an ArrayList or other structure

  • Field Details

    • numberOfNonNullBins

      public final int numberOfNonNullBins

    • maxBinNumber

      public final int maxBinNumber

  • Constructor Details

    • BinList

      public BinList(Bin[] binArray, int numberOfNonNullBins)
      Parameters:
      binArray - a sparse array representation of the bins. The index into the array is the bin number.
      numberOfNonNullBins -

  • Method Details

    • getBin

      public Bin getBin(int binNumber)

    • getNumberOfNonNullBins

      public int getNumberOfNonNullBins()

    • iterator

      public Iterator<Bin> iterator()
      Specified by:
      iterator in interface Iterable<Bin>
      Returns:
      An iterator over all non-empty bins.

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object