Package htsjdk.samtools

Class NotPrimarySkippingIterator

java.lang.Object

htsjdk.samtools.SecondaryAlignmentSkippingIterator

htsjdk.samtools.NotPrimarySkippingIterator

@Deprecated
public class NotPrimarySkippingIterator
extends SecondaryAlignmentSkippingIterator

Deprecated.

use SecondaryAlignmentSkippingIterator instead.

Wrapper around SAMRecord iterator that skips over non-primary elements. This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to handle those concerns separately.

Constructor Summary

Constructors

Constructor	Description
NotPrimarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)	Deprecated.

Method Summary

Methods inherited from class htsjdk.samtools.SecondaryAlignmentSkippingIterator

advance, getCurrent, hasCurrent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NotPrimarySkippingIterator

public NotPrimarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)

Deprecated.