Package htsjdk.samtools.cram.encoding.readfeatures
package htsjdk.samtools.cram.encoding.readfeatures
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ClassDescriptionA read feature representing a single quality score in a read.A read feature representing a deletion of one or more bases similar to
CigarOperator.D
.A read feature representing a hard clip similar toCigarOperator.H
.A read feature representing a single insert base.A read feature representing a multi-base insertion.A read feature representing padding, similar toCigarOperator.P
.A read feature representing a single base with associated quality score.An interface to capture data in read coordinates.A read feature representing a reference skip similar toCigarOperator.N
.A read feature representing a contiguous stretch of quality scores in a read.A read feature representing a soft clip similar toCigarOperator.S
.A substitution event captured in read coordinates.