Package htsjdk.variant.variantcontext.filter
package htsjdk.variant.variantcontext.filter
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ClassDescriptionA Predicate on VariantContexts that returns true when either all its sub-predicates are true, or none are false.Deprecated.A filtering iterator for VariantContexts that takes a base iterator and a VariantContextFilter.A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).A Predicate on VariantContexts that either returns true at heterozygous sites (invertible to false).javascript based variant filter The script puts the following variables in the script context: - 'header' a htsjdk.variant.vcf.VCFHeader - 'variant' a htsjdk.variant.variantcontext.VariantContextA Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).A Predicate on VariantContexts that returns true at sites that are SNPsAPI for filtering VariantContexts.
FilteringVariantContextIteratorinstead