Package htsjdk.beta.plugin.interval
package htsjdk.beta.plugin.interval
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ClassDescriptionA common interface for 1-based, closed genomic intervals.Methods for interconverting between HtsQueryInterval and existing htsjdk types such as Locatable/QueryIntervalHtsQuery<RECORD>Common query interface for
HtsDecoder
sAn concrete query interval implementation ofHtsInterval
used for random access queries on file formats represented byHtsDecoder
s that support random access.Query rule values used to determine signal whether a query should match overlapping or contained records.