Package htsjdk.samtools.util

Class SamConstants

java.lang.Object

htsjdk.samtools.util.SamConstants

public final class SamConstants
extends Object

A set of constants defined in the sam-spec (https://github.com/samtools/hts-specs) that need to be referenced in code.

Field Summary

Fields

Modifier and Type	Field	Description
static final String	BARCODE_QUALITY_DELIMITER	The recommend separator to use when specifying multiple barcode quality scores together in the same tag.
static final String	BARCODE_SEQUENCE_DELIMITER	The recommended separator to use when specifying multiple barcodes together in the same tag.

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

BARCODE_SEQUENCE_DELIMITER

public static final String BARCODE_SEQUENCE_DELIMITER

The recommended separator to use when specifying multiple barcodes together in the same tag.

See Also:

• Constant Field Values

BARCODE_QUALITY_DELIMITER

public static final String BARCODE_QUALITY_DELIMITER

The recommend separator to use when specifying multiple barcode quality scores together in the same tag.

See Also:

• Constant Field Values