Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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final
def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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final
def
getClass(): Class[_]
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def
hashCode(): Int
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final
def
isInstanceOf[T0]: Boolean
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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def
score(s1: String, s2: String): Double
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def
score(s1: String, s2: String, gap: ConstantGap): Double
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def
smithWaterman[T](s1: Array[T], s2: Array[T], gap: Gap = LinearGap(), windowSize: Int = Integer.MAX_VALUE): Double
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def
smithWatermanGotoh[T](s1: Array[T], s2: Array[T], gap: ConstantGap = ConstantGap()): Double
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def
subst[T](a: Array[T], aIndex: Int, b: Array[T], bIndex: Int, gap: Gap): Double
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
Inherited from SmithWatermanImpl
Inherited from GapSubstitution
Inherited from AnyRef
Inherited from Any
Implicit definition of smith waterman gotoh score for SmithWatermanGotohAlgorithm.