the application associated with these command line options
The AnnotationSeq generated from command line arguments
The AnnotationSeq generated from command line arguments
This requires lazy evaluation as subclasses will mixin new command line options via methods of Shell.parser
Command line argument parser (OptionParser) with modifications
Command line argument parser (OptionParser) with modifications
Contains all discovered RegisteredLibrary
Contains all discovered RegisteredTransform
A utility for working with command line options