fr.iscpif.scalabc

BeaumontExecuter

trait BeaumontExecuter extends Beaumont with SequentialExecuter

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Inherited
  1. BeaumontExecuter
  2. SequentialExecuter
  3. Model
  4. Beaumont
  5. ABC
  6. Distance
  7. ParticleMover
  8. AnyRef
  9. Any
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Type Members

  1. case class BeaumontState(iteration: Int, toleranceIndex: Int, accepted: Option[Seq[WeightedSimulation]], varSummaryStats: Option[Seq[Double]], evaluationsForStep: Int, evaluations: Int) extends State with Product with Serializable

    Definition Classes
    Beaumont
  2. type STATE = BeaumontState

    Definition Classes
    BeaumontABC

Abstract Value Members

  1. abstract def distance(summaryStats: Seq[Double], initVariance: Seq[Double]): Double

    summaryStats
    initVariance

    min(1, 1/empirical variances)

    returns

    Definition Classes
    Distance
  2. abstract def model(input: Seq[Double], seed: Long): Seq[Double]

    Definition Classes
    Model
  3. abstract def move(simulations: Seq[WeightedSimulation])(implicit rng: Random): Seq[Double]

    Definition Classes
    ParticleMover
  4. abstract def priors: Seq[PriorFunction]

    Definition Classes
    ABC
  5. abstract def simulations: Int

    Definition Classes
    ABC
  6. abstract def summaryStatsTarget: Seq[Double]

    Definition Classes
    ABCDistance
  7. abstract def tolerances: Seq[Double]

    Definition Classes
    Beaumont

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. def computeWeights(previouslyAccepted: Seq[WeightedSimulation], newAccepted: Seq[Simulation]): Seq[Double]

    computes particle weights with unidimensional jumps

    computes particle weights with unidimensional jumps

    Definition Classes
    Beaumont
  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. def finished(s: STATE): Boolean

    Definition Classes
    BeaumontABC
  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  13. def initialState: BeaumontState

    Definition Classes
    BeaumontABC
  14. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  15. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  16. final def notify(): Unit

    Definition Classes
    AnyRef
  17. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  18. def run(implicit rng: Random): Iterator[STATE]

    Definition Classes
    SequentialExecuter
  19. def runSimulations(thetas: Seq[Seq[Double]])(implicit rng: Random): Seq[Seq[Double]]

    Definition Classes
    SequentialExecuter
  20. def sample(previousState: BeaumontState, nbSimus: Int)(implicit rng: Random): Seq[Seq[Double]]

    Definition Classes
    Beaumont
  21. def selectSimulation(thetas: Seq[Seq[Double]], summaryStats: Seq[Seq[Double]], var_summaryStats: Seq[Double], tolerance: Double): Seq[Simulation]

    Definition Classes
    Beaumont
  22. def step(previousState: STATE)(implicit rng: Random): BeaumontState

    Definition Classes
    BeaumontExecuterSequentialExecuter
  23. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  24. def toString(): String

    Definition Classes
    AnyRef → Any
  25. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SequentialExecuter

Inherited from Model

Inherited from Beaumont

Inherited from ABC

Inherited from Distance

Inherited from ParticleMover

Inherited from AnyRef

Inherited from Any

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