1. com
   1. com.typesafe
      1. com.typesafe.scalalogging
         1. (trait)AbstractLogging
         2. (trait)LazyLogging
2. htsjdk
   1. htsjdk.variant
      1. htsjdk.variant.variantcontext
         1. htsjdk.variant.variantcontext.writer
            1. (object)
               VCFHeaderWriter
      2. htsjdk.variant.vcf
         1. (object)
            VCFEncoderUtils
3. io
   1. io.projectglow
      1. (trait)DataFrameTransformer
      2. (object)
         functions
      3. (object)
         Glow
      4. (class)GlowBase
      5. (object)
         SparkShim
      6. (trait)SparkShimBase
      1. io.projectglow.bgen
         1. (object)(class)BgenFileFormat
         2. (object)(class)BgenRecordWriter
         3. (class)BgenRowToInternalRowConverter
         4. (object)
            BgenSchemaInferrer
         5. (object)(class)BigBgenDatasource
         6. (case class)BigBgenOptions
         7. (class)ComDatabricksBgenFileFormat
         8. (class)ComDatabricksBigBgenDatasource
         9. (case class)FractionalPartIndex
         10. (case class)GenotypeCharacteristics
         11. (class)InternalRowToBgenRowConverter
         12. (case class)ProbabilityBlockSize
         13. (trait)SNPBlockCompression
         14. (class)SortByDescendingFractionalPart
         15. (object)
             Zlib
         16. (object)
             Zstd
      2. io.projectglow.common
         1. (object)
            BgenOptions
         2. (object)
            CommonOptions
         3. (object)(case class)GenotypeFields
         4. (trait)GlowLogging
         5. (object)
            HailUtils
         6. (trait)HasStringency
         7. (trait)Named
         8. (object)
            PlinkOptions
         9. (object)
            VariantSchemas
         10. (object)
             VCFOptions
         11. (object)(case class)VCFRow
         12. (object)
             WithUtils
         1. io.projectglow.common.logging
            1. (trait)HlsEventRecorder
            2. (object)
               HlsMetricDefinitions
            3. (object)
               HlsTagDefinitions
            4. (object)
               HlsTagValues
            5. (trait)HlsUsageLogging
            6. (case class)MetricDefinition
            7. (case class)TagDefinition
      3. io.projectglow.plink
         1. (class)BedFileIterator
         2. (object)(class)PlinkFileFormat
         3. (class)PlinkRowToInternalRowConverter
      4. io.projectglow.sql
         1. (object)(class)BigFileDatasource
         2. (trait)BigFileUploader
         3. (class)Functions
         4. (class)GlowSQLExtensions
         5. (case class)SingleFileRelation
         6. (object)
            SqlExtensionProvider
         1. io.projectglow.sql.expressions
            1. (case class)AddStructFields
            2. (trait)AggregateByIndex
            3. (case class)ArrayStatsSummary
            4. (object)(case class)ArrayToDenseVector
            5. (object)(case class)ArrayToSparseVector
            6. (object)(case class)CallStats
            7. (case class)CallStatsStruct
            8. (case class)CallSummaryStats
            9. (object)(case class)CovariateQRContext
            10. (case class)DpSummaryStats
            11. (case class)ExpandStruct
            12. (case class)ExplodeMatrix
            13. (case class)FirthFit
            14. (case class)FirthFitState
            15. (class)FirthNewtonArgs
            16. (object)
                FirthTest
            17. (case class)GenotypeStates
            18. (case class)GqSummaryStats
            19. (case class)HardCalls
            20. (object)(case class)HardyWeinberg
            21. (case class)HardyWeinbergStruct
            22. (case class)LiftOverCoordinatesExpr
            23. (object)
                LikelihoodRatioTest
            24. (object)(case class)LinearRegressionExpr
            25. (object)
                LinearRegressionGwas
            26. (object)(case class)LogisticRegressionExpr
            27. (object)
                LogisticRegressionGwas
            28. (class)LogisticRegressionState
            29. (trait)LogitTest
            30. (object)(case class)LogitTestResults
            31. (case class)LRTFitState
            32. (object)(case class)MomentAggState
            33. (class)NewtonIterationsState
            34. (case class)NewtonResult
            35. (object)(case class)NormalizeVariantExpr
            36. (case class)PerSampleSummaryStatistics
            37. (case class)RegressionStats
            38. (object)(case class)SampleCallStats
            39. (case class)SampleDpSummaryStatistics
            40. (case class)SampleGqSummaryStatistics
            41. (case class)SampleSummaryStatsState
            42. (case class)SubsetStruct
            43. (case class)UnwrappedAggregateByIndex
            44. (trait)UnwrappedAggregateFunction
            45. (object)
                VariantQcExprs
            46. (object)(trait)VariantType
            47. (object)
                VariantUtilExprs
            48. (object)(case class)VectorToArray
            49. (case class)WrappedAggregateByIndex
         2. io.projectglow.sql.optimizer
            1. (object)
               ReplaceExpressionsRule
            2. (object)
               ResolveAggregateFunctionsRule
            3. (object)
               ResolveExpandStructRule
         3. io.projectglow.sql.util
            1. (class)BGZFCodec
            2. (trait)ComDatabricksDataSource
            3. (trait)ExpectsGenotypeFields
            4. (class)HadoopLineIterator
            5. (object)(class)LeveneHaldane
            6. (trait)Rewrite
            7. (trait)RewriteAfterResolution
            8. (object)(class)RowConverter
            9. (class)SerializableConfiguration
      5. io.projectglow.transformers
         1. (object)(class)LiftOverVariantsTransformer
         1. io.projectglow.transformers.normalizevariants
            1. (object)(class)NormalizeVariantsTransformer
            2. (object)
               VariantNormalizer
         2. io.projectglow.transformers.pipe
            1. (class)CleanupPipeTransformer
            2. (class)CSVInputFormatter
            3. (class)CSVInputFormatterFactory
            4. (class)CSVOutputFormatter
            5. (class)CSVOutputFormatterFactory
            6. (trait)InputFormatter
            7. (trait)InputFormatterFactory
            8. (trait)OutputFormatter
            9. (trait)OutputFormatterFactory
            10. (class)PipeIterator
            11. (object)(class)PipeTransformer
            12. (object)
                ProcessHelper
            13. (class)UTF8TextInputFormatter
            14. (class)UTF8TextInputFormatterFactory
            15. (class)UTF8TextOutputFormatter
            16. (class)UTF8TextOutputFormatterFactory
         3. io.projectglow.transformers.splitmultiallelics
            1. (object)(class)SplitMultiallelicsTransformer
         4. io.projectglow.transformers.util
            1. (class)SnakeCaseMap
            2. (object)
               StringUtils
      6. io.projectglow.vcf
         1. (object)
            AnnotationUtils
         2. (object)(class)BigVCFDatasource
         3. (class)ComDatabricksBigVCFDatasource
         4. (class)ComDatabricksVCFFileFormat
         5. (object)
            FieldTypes
         6. (class)FilterContig
         7. (class)FilterInterval
         8. (object)
            InferSampleIds
         9. (object)(class)InternalRowToVariantContextConverter
         10. (class)LineIteratorImpl
         11. (case class)ParsedFilterResult
         12. (trait)SampleIdInfo
         13. (case class)SampleIds
         14. (object)
             TabixIndexHelper
         15. (class)VariantContextToInternalRowConverter
         16. (object)(class)VariantContextToVCFRowConverter
         17. (case class)VariantContextWrapper
         18. (object)(class)VCFFileFormat
         19. (class)VCFFileWriter
         20. (object)
             VCFHeaderUtils
         21. (class)VCFInputFormatter
         22. (class)VCFInputFormatterFactory
         23. (object)
             VCFMetadataLoader
         24. (class)VCFOutputFormatter
         25. (class)VCFOutputFormatterFactory
         26. (object)
             VCFRowHeaderLines
         27. (class)VCFRowToVariantContextConverter
         28. (object)
             VCFSchemaInferrer
         29. (class)VCFStreamWriter
         30. (object)
             VCFWriterUtils
4. org
   1. org.apache
      1. org.apache.spark
         1. org.apache.spark.sql
            1. (object)
               SQLUtils
            1. org.apache.spark.sql.catalyst
               1. org.apache.spark.sql.catalyst.expressions
                  1. (class)QuaternaryExpression
                  2. (class)QuinaryExpression
                  3. (class)SenaryExpression
            2. org.apache.spark.sql.execution
               1. org.apache.spark.sql.execution.datasources
                  1. org.apache.spark.sql.execution.datasources.csv
                     1. (object)
                        CSVDataSourceUtils
                     2. (class)MinimalFailureSafeParser
                     3. (class)SGUnivocityGenerator
                     4. (object)
                        UnivocityParserUtils
   2. org.seqdoop
      1. org.seqdoop.hadoop_bam
         1. org.seqdoop.hadoop_bam.util
            1. (object)(class)DatabricksBGZFOutputStream