All Classes and Interfaces
Class
Description
A genome transcriber that supports both
AsexualTransposGenomeTranscriber
and MutationGenomeTranscriberA genome transcriber that uses
AsexualTransposGenomeTranscriber.GENOME_TRANSPOSE_PROBABILITY
to randomly transpose gene sequencesA fitness function based on Organism Age, Number of Cells, Energy Efficiency,
Energy Waste, Offspring, and Death to generate a deterministic fitness
Interface for representing cells and providing a uniform interface for manipulating them
Helper class for cell operations
The ecosystem the simulation will run in.
Configuration options for simulations
Create a new seed that can be ejected from the plant
Creates a new seed that can be ejected from the plant
Metadata to track population growth over timeAn ecosystem that once started will run until end without input
Configuration options for automated simulations
This class is a wrapper around
RuntimeException that has
a human-readable and displayable error message.Interface for providing fitness calculations.
A 2-dimensional universe for plant life
A 2-dimensional implementation of
TerrainThe
ResourceManager for FlatWorldRepresents a gene with 4 nucleotides
This is a common interface for genomes interfacing with the world
Enum of lambdas that provide travel across SpatialCoordinates
An iterator over the bits in a genome
Serializes or deserializes
Genome objectsParses a serialized genome and coordinates
Writes the genome to an
OutputStreamAn interface for genome transcription
Grows a leaf cell
Grows a root cell
Grows a seed on the organism
Genome transcriber that makes no errors and is always a perfect copy
Marks a field in a
Metadata able to be used for searches.A searchable
MetadataStore backed by a tmp fileA leaf cell that is able to harvest energy from
SolarEnergyTerrainPropertyAbstract class to generically support Json parsers
Interface to force type conformity in the metadata system.
Provides methods for accessing the tracked metadata
Thread-safe
MetadataStoreGroup factory.A thread safe collection of
MetadataStore objectsTranscribe genome using
MutationGenomeTranscriber.GENOME_MUTATE_PROBABILITY to determine
when to flip a bitRepresents an organism in the simulation
A factory for creating new organisms
An interface for converting DNA to behavior
A cell specifically for plants
Provides genome interpretation and expression.
The enum that binds the raw binary values to gene expressions for cells
An organism that uses a
PlantGenome and PlantBehaviorA generic Quad Function interface
A
TerrainProperty for radioactivityAssigns random numbers as fitness
A utility class to generate random genomes.
Interface to provide terrain resource management
A root cell that can harvest energy from
SoilNutrientsTerrainPropertyMarks an ordinary
Metadata class as searchable in the MetadataStoreProvides interface for a searchable
MetadataStoreA seed cell that can grow any cell
Configuration for
SimpleSimulatorA utility class for running multiple simulations in serial
A
TerrainProperty for soil nutrientsA
TerrainProperty for soil toxicityA
TerrainProperty for soil toxicityAn abstract class for adding support for parsing coordinate ranges.
Represents spatial coordinates in a 3D space
Not that kind of stem cell.
An interactive ecosystem that is updated by turns (collections of ticks)
Configuration options for interactive simulations
Represent a temporal coordinate in the simulation
A representation of the environment.
A factory for creating new
TerrainA common interface for setting, tracking, and manipulating terrain property
Factory for creating new
TerrainPropertyAn abstract class to hold simulation wide constants such as configuration.
Deprecated.