TranSMARTServiceImpl

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1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. final def asInstanceOf[T0]: T0

   

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5. def clone(): AnyRef

   

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6. def createClinicalDataAndMappingFiles(delimiter: String, newLine: String, replacements: Iterable[(String, String)])(items: Traversable[JsObject], dataFileName: String, keyField: String, visitField: Option[String], fieldCategoryMap: Map[String, Category], rootCategory: Category, fields: Traversable[Field]): (String, String)

   

   Deprecated.

   Deprecated. Process input items to create clinical and mapping file. Replace substrings and symbols if necessary, map columns to tranSMART properties and fields.

   delimiter

   String to use as entry delimiter.

   newLine

   String to use as line delimiter.

   replacements

   List of pairs for replacing strings and symbols of format: (input string, replacement).

   items

   Items to be written into output file. May be modified with respect to the other parameters.

   dataFileName

   Name of output file.

   keyField

   Field for use as unique key for tranSMART mapping file.

   visitField

   Field to be used as visit field in tranSMART mapping file.

   fieldCategoryMap

   Define which field names map to which tranSMART categories.

   rootCategory

   Category to be used as tranSMART root.

   fields

   The list of fields.

   returns

   Pair containing the content for the tranSMART datafile and the tranSMART mapping file.

   Definition Classes

   TranSMARTServiceImpl → TranSMARTService

   See also

   createClinicalMapping()

   createClinicalData()

7. def createClinicalDataFile(delimiter: String, newLine: String, replacements: Iterable[(String, String)])(items: Traversable[JsObject], keyFieldName: String, visitFieldName: Option[String], fieldCategoryMap: Map[String, Category], nameFieldTypeMap: Map[String, FieldType[_]]): String

   

   Generates the content for the clinical data file.

   Generates the content for the clinical data file. Replace substrings and symbols if necessary, map columns to tranSMART properties and fields.

   delimiter

   String to use as entry delimiter.

   newLine

   String to use as line delimiter.

   replacements

   List of pairs for replacing strings and symbols of format: (input string, replacement).

   items

   Items to be written into output file. May be modified with respect to the other parameters.

   keyFieldName

   Field for use as unique key for tranSMART mapping file.

   visitFieldName

   Field to be used as visit field in tranSMART mapping file.

   Definition Classes

   TranSMARTServiceImpl → TranSMARTService

8. def createClinicalMapping(dataFileName: String, keyField: String, visitField: Option[String], fieldsInOrder: Iterable[String], fieldCategoryMap: Map[String, Category], rootCategory: Category, fieldNameLabelMap: Map[String, Option[String]]): Traversable[JsObject]

   

   Creates a template for the clinical mapping

   Creates a template for the clinical mapping

   dataFileName

   Name of output file.

   keyField

   Field for use as unique key for tranSMART mapping file.

   visitField

   Field to be used as visit field in tranSMART mapping file.

   fieldsInOrder

   Filtered input fields.

   fieldCategoryMap

   Define which field names map to which tranSMART categories.

   rootCategory

   Category to be used as tranSMART root.

   fieldNameLabelMap

   (Re)map field to labels in tranSMART file.

   returns

   Items containing the values for the clinical mapping file.

   Definition Classes

   TranSMARTServiceImpl → TranSMARTService

9. def createMappingFile(delimiter: String, newLine: String, replacements: Iterable[(String, String)])(dataFileName: String, keyField: String, visitField: Option[String], fieldCategoryMap: Map[String, Category], rootCategory: Category, fieldNameLabelMap: Map[String, Option[String]]): String

   

   Generate the content for the data mapping file.

   Generate the content for the data mapping file. Replace substrings and symbols if necessary, map columns to tranSMART properties and fields.

   delimiter

   String to use as entry delimiter.

   newLine

   String to use as line delimiter.

   replacements

   List of pairs for replacing strings and symbols of format: (input string, replacement).

   dataFileName

   Name of output file.

   keyField

   Field for use as unique key for tranSMART mapping file.

   visitField

   Field to be used as visit field in tranSMART mapping file.

   fieldCategoryMap

   Define which field names map to which tranSMART categories.

   rootCategory

   Category to be used as tranSMART root.

   fieldNameLabelMap

   (Re)map field to labels in tranSMART file.

   Definition Classes

   TranSMARTServiceImpl → TranSMARTService

10. final def eq(arg0: AnyRef): Boolean

    

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11. def equals(arg0: Any): Boolean

    

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12. def finalize(): Unit

    

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13. final def getClass(): Class[_]

    

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14. def hashCode(): Int

    

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15. final def isInstanceOf[T0]: Boolean

    

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16. final def ne(arg0: AnyRef): Boolean

    

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17. final def notify(): Unit

    

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18. final def notifyAll(): Unit

    

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19. final def synchronized[T0](arg0: ⇒ T0): T0

    

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20. def toString(): String

    

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21. final def wait(): Unit

    

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22. final def wait(arg0: Long, arg1: Int): Unit

    

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23. final def wait(arg0: Long): Unit

    

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