package
java
Type Members
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final
class
AlignmentRecordsToContigsConverter extends Function2[AlignmentRecordRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
AlignmentRecordsToCoverageConverter extends Function2[AlignmentRecordRDD, RDD[Coverage], CoverageRDD]
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final
class
AlignmentRecordsToFeaturesConverter extends Function2[AlignmentRecordRDD, RDD[Feature], FeatureRDD]
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final
class
AlignmentRecordsToFragmentsConverter extends Function2[AlignmentRecordRDD, RDD[Fragment], FragmentRDD]
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final
class
AlignmentRecordsToGenotypesConverter extends Function2[AlignmentRecordRDD, RDD[Genotype], GenotypeRDD]
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final
class
AlignmentRecordsToVariantContextConverter extends Function2[AlignmentRecordRDD, RDD[VariantContext], VariantContextRDD]
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final
class
AlignmentRecordsToVariantsConverter extends Function2[AlignmentRecordRDD, RDD[Variant], VariantRDD]
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final
class
ContigsToAlignmentRecordsConverter extends Function2[NucleotideContigFragmentRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
ContigsToCoverageConverter extends Function2[NucleotideContigFragmentRDD, RDD[Coverage], CoverageRDD]
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final
class
ContigsToFeaturesConverter extends Function2[NucleotideContigFragmentRDD, RDD[Feature], FeatureRDD]
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final
class
ContigsToFragmentsConverter extends Function2[NucleotideContigFragmentRDD, RDD[Fragment], FragmentRDD]
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final
class
ContigsToGenotypesConverter extends Function2[NucleotideContigFragmentRDD, RDD[Genotype], GenotypeRDD]
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final
class
ContigsToVariantContextsConverter extends Function2[NucleotideContigFragmentRDD, RDD[VariantContext], VariantContextRDD]
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final
class
ContigsToVariantsConverter extends Function2[NucleotideContigFragmentRDD, RDD[Variant], VariantRDD]
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final
class
CoverageToAlignmentRecordsConverter extends Function2[CoverageRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
CoverageToContigsConverter extends Function2[CoverageRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
CoverageToFeaturesConverter extends Function2[CoverageRDD, RDD[Feature], FeatureRDD]
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final
class
CoverageToFragmentsConverter extends Function2[CoverageRDD, RDD[Fragment], FragmentRDD]
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final
class
CoverageToGenotypesConverter extends Function2[CoverageRDD, RDD[Genotype], GenotypeRDD]
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final
class
CoverageToVariantContextConverter extends Function2[CoverageRDD, RDD[VariantContext], VariantContextRDD]
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final
class
CoverageToVariantsConverter extends Function2[CoverageRDD, RDD[Variant], VariantRDD]
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final
class
FeaturesToAlignmentRecordsConverter extends Function2[FeatureRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
FeaturesToContigsConverter extends Function2[FeatureRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
FeaturesToCoverageConverter extends Function2[FeatureRDD, RDD[Coverage], CoverageRDD]
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final
class
FeaturesToFragmentsConverter extends Function2[FeatureRDD, RDD[Fragment], FragmentRDD]
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final
class
FeaturesToGenotypesConverter extends Function2[FeatureRDD, RDD[Genotype], GenotypeRDD]
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final
class
FeaturesToVariantContextConverter extends Function2[FeatureRDD, RDD[VariantContext], VariantContextRDD]
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final
class
FeaturesToVariantsConverter extends Function2[FeatureRDD, RDD[Variant], VariantRDD]
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final
class
FragmentsToAlignmentRecordsConverter extends Function2[FragmentRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
FragmentsToContigsConverter extends Function2[FragmentRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
FragmentsToCoverageConverter extends Function2[FragmentRDD, RDD[Coverage], CoverageRDD]
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final
class
FragmentsToFeaturesConverter extends Function2[FragmentRDD, RDD[Feature], FeatureRDD]
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final
class
FragmentsToGenotypesConverter extends Function2[FragmentRDD, RDD[Genotype], GenotypeRDD]
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final
class
FragmentsToVariantContextConverter extends Function2[FragmentRDD, RDD[VariantContext], VariantContextRDD]
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final
class
FragmentsToVariantsConverter extends Function2[FragmentRDD, RDD[Variant], VariantRDD]
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final
class
GenotypesToAlignmentRecordsConverter extends Function2[GenotypeRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
GenotypesToContigsConverter extends Function2[GenotypeRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
GenotypesToCoverageConverter extends Function2[GenotypeRDD, RDD[Coverage], CoverageRDD]
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final
class
GenotypesToFeaturesConverter extends Function2[GenotypeRDD, RDD[Feature], FeatureRDD]
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final
class
GenotypesToFragmentsConverter extends Function2[GenotypeRDD, RDD[Fragment], FragmentRDD]
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final
class
GenotypesToVariantContextConverter extends Function2[GenotypeRDD, RDD[VariantContext], VariantContextRDD]
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final
class
GenotypesToVariantsConverter extends Function2[GenotypeRDD, RDD[Variant], VariantRDD]
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sealed
trait
SameTypeConversion[T, U <: GenomicRDD[T, U]] extends Function2[U, RDD[T], U]
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trait
ToAlignmentRecordDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, AlignmentRecord, AlignmentRecordRDD]
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trait
ToContigDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, NucleotideContigFragment, NucleotideContigFragmentRDD]
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trait
ToCoverageDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, Coverage, CoverageRDD]
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trait
ToFeatureDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, Feature, FeatureRDD]
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trait
ToFragmentDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, Fragment, FragmentRDD]
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trait
ToGenotypeDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, Genotype, GenotypeRDD]
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trait
ToVariantDatasetConversion[T <: Product, U <: GenomicDataset[_, T, U]] extends GenomicDatasetConversion[T, U, Variant, VariantRDD]
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final
class
VariantContextsToAlignmentRecordsConverter extends Function2[VariantContextRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
VariantContextsToContigsConverter extends Function2[VariantContextRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
VariantContextsToCoverageConverter extends Function2[VariantContextRDD, RDD[Coverage], CoverageRDD]
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final
class
VariantContextsToFeaturesConverter extends Function2[VariantContextRDD, RDD[Feature], FeatureRDD]
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final
class
VariantContextsToFragmentsConverter extends Function2[VariantContextRDD, RDD[Fragment], FragmentRDD]
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final
class
VariantContextsToGenotypesConverter extends Function2[VariantContextRDD, RDD[Genotype], GenotypeRDD]
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final
class
VariantContextsToVariantsConverter extends Function2[VariantContextRDD, RDD[Variant], VariantRDD]
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final
class
VariantsToAlignmentRecordsConverter extends Function2[VariantRDD, RDD[AlignmentRecord], AlignmentRecordRDD]
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final
class
VariantsToContigsConverter extends Function2[VariantRDD, RDD[NucleotideContigFragment], NucleotideContigFragmentRDD]
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final
class
VariantsToCoverageConverter extends Function2[VariantRDD, RDD[Coverage], CoverageRDD]
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final
class
VariantsToFeaturesConverter extends Function2[VariantRDD, RDD[Feature], FeatureRDD]
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final
class
VariantsToFragmentsConverter extends Function2[VariantRDD, RDD[Fragment], FragmentRDD]
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final
class
VariantsToGenotypesConverter extends Function2[VariantRDD, RDD[Genotype], GenotypeRDD]
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final
class
VariantsToVariantContextConverter extends Function2[VariantRDD, RDD[VariantContext], VariantContextRDD]
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