JavaAlignmentRecordRDD

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. def adamSAMSave(filePath: String): Unit

   

   Saves this RDD to disk as a SAM file.

   Saves this RDD to disk as a SAM file.

   filePath

   Path to save the file at.

5. def adamSAMSave(filePath: String, asSam: Boolean): Unit

   

   Saves this RDD to disk as a SAM/BAM file.

   Saves this RDD to disk as a SAM/BAM file.

   filePath

   Path to save the file at.

   asSam

   If true, saves as SAM. If false, saves as BAM.

6. def adamSave(filePath: String): Unit

   

   Saves this RDD to disk as a Parquet file.

   Saves this RDD to disk as a Parquet file.

   filePath

   Path to save the file at.

7. def adamSave(filePath: String, blockSize: Integer, pageSize: Integer, compressCodec: CompressionCodecName, disableDictionaryEncoding: Boolean): Unit

   

   Saves this RDD to disk as a Parquet file.

   Saves this RDD to disk as a Parquet file.

   filePath

   Path to save the file at.

   blockSize

   Size per block.

   pageSize

   Size per page.

   compressCodec

   Name of the compression codec to use.

   disableDictionaryEncoding

   Whether or not to disable bit-packing.

8. final def asInstanceOf[T0]: T0

   

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9. def clone(): AnyRef

   

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   protected[java.lang]

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10. final def eq(arg0: AnyRef): Boolean

    

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11. def equals(arg0: Any): Boolean

    

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12. def finalize(): Unit

    

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    protected[java.lang]

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13. final def getClass(): Class[_]

    

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14. def hashCode(): Int

    

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15. final def isInstanceOf[T0]: Boolean

    

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16. val jrdd: JavaRDD[AlignmentRecord]

    

17. final def ne(arg0: AnyRef): Boolean

    

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18. final def notify(): Unit

    

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19. final def notifyAll(): Unit

    

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20. final def synchronized[T0](arg0: ⇒ T0): T0

    

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21. def toString(): String

    

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22. final def wait(): Unit

    

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23. final def wait(arg0: Long, arg1: Int): Unit

    

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24. final def wait(arg0: Long): Unit

    

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