CommandGroup
cli
CountContigKmers
cli
CountContigKmersArgs
cli
CountReadKmers
cli
CountReadKmersArgs
cli
cache
TransformAlignmentsArgs
cli
adam
coalesce
ADAM2FastaArgs TransformAlignmentsArgs TransformGenotypesArgs TransformVariantsArgs
collapse
Reads2CoverageArgs
command
TransformAlignmentsArgs
commandDescription
ADAM2Fasta ADAM2Fastq CountContigKmers CountReadKmers Fasta2ADAM FlagStat MergeShards PrintADAM Reads2Coverage TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformVariants View
commandName
ADAM2Fasta ADAM2Fastq CountContigKmers CountReadKmers Fasta2ADAM FlagStat MergeShards PrintADAM Reads2Coverage TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformVariants View
commands
CommandGroup
commit
About
companion
ADAM2Fasta ADAM2Fastq CountContigKmers CountReadKmers Fasta2ADAM FlagStat MergeShards PrintADAM Reads2Coverage TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformVariants View
concatFilename
TransformAlignmentsArgs
configure
ADAMModule
cramEof
MergeShardsArgs