CommandGroup
cli
CountContigKmers
cli
CountContigKmersArgs
cli
CountReadKmers
cli
CountReadKmersArgs
cli
cache
TransformAlignmentsArgs
cli
adam
coalesce
ADAM2FastaArgs
TransformAlignmentsArgs
TransformGenotypesArgs
TransformVariantsArgs
collapse
Reads2CoverageArgs
command
TransformAlignmentsArgs
commandDescription
ADAM2Fasta
ADAM2Fastq
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
MergeShards
PrintADAM
Reads2Coverage
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformVariants
View
commandName
ADAM2Fasta
ADAM2Fastq
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
MergeShards
PrintADAM
Reads2Coverage
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformVariants
View
commands
CommandGroup
commit
About
companion
ADAM2Fasta
ADAM2Fastq
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
MergeShards
PrintADAM
Reads2Coverage
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformVariants
View
concatFilename
TransformAlignmentsArgs
configure
ADAMModule
cramEof
MergeShardsArgs