ReadFilter
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Reads2Coverage
cli
Reads2CoverageArgs
cli
reads
Fasta2ADAMArgs
recalibrateBaseQualities
TransformAlignmentsArgs
reference
TransformAlignmentsArgs
regionPredicate
TransformAlignmentsArgs
repartition
ADAM2FastqArgs
CountReadKmersArgs
TransformAlignmentsArgs
run
ADAM2Fasta
ADAM2Fastq
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
MergeShards
PrintADAM
Reads2Coverage
TransformAlignments
TransformFeatures
TransformFragments
TransformGenotypes
TransformVariants
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