org.bdgenomics.adam.cli

Fasta2ADAMArgs

class Fasta2ADAMArgs extends Args4jBase with ParquetSaveArgs

Linear Supertypes
ParquetSaveArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Fasta2ADAMArgs
  2. ParquetSaveArgs
  3. SaveArgs
  4. ParquetArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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Visibility
  1. Public
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Instance Constructors

  1. new Fasta2ADAMArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  10. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  11. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. var fastaFile: String

  15. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  17. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  18. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  19. var logLevel: String

    Definition Classes
    ParquetArgs

  20. var maximumLength: Long

  21. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  22. final def notify(): Unit

    Definition Classes
    AnyRef

  23. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  24. var outputPath: String

    Definition Classes
    Fasta2ADAMArgs → SaveArgs

  25. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  26. var partitions: Int

  27. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  28. var reads: String

  29. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  30. def toString(): String

    Definition Classes
    AnyRef → Any

  31. var verbose: Boolean

  32. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetSaveArgs

Inherited from SaveArgs

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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